PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2V49U
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 406aa    MW: 44022.7 Da    PI: 8.8188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2V49UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-054870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Aradu.2V49U 48 FICEICNKGFQRDQNLQLHRRGH 70
                 89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-64770No hitNo description
Gene3DG3DSA:3.30.160.601.0E-54770IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.7E-54870IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8454870IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-6100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMNPNPNNKG SEEGGVIQKK KRNHPGTPDP EAEVIALSPK TLMATNRFIC EICNKGFQRD  60
QNLQLHRRGH NLPWKLRQRS NKGSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI  120
THRAFCDALA LETSSLLLPP STTNLNFHTQ QPPPPPSHAL IPPLHFNHSP NLSLWLNHHQ  180
QHATSSHDNN SNLVGLYHHN ASSSLPLPDI VQMNNFTHNS NSANHLSLSS SSLPAIGKSS  240
DNLASIYTSD GQSTTTDNNN NQLSPMSATA LLQKAAQMGS TRSTTTPSIF SATFGVMTSS  300
SSNNSNHAHA GDFASTSSFT SFTHSSNTYD QLVMQTAAQN STTDPAGNLK LPHHAGSNSA  360
SMEHNLTRDF LGVSGAGEGP AGLHQFLPQE LAKFASSMGL TQFTTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938005.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ9ZWA62e-68IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLI1JPL11e-117I1JPL1_SOYBN; Uncharacterized protein
STRINGGLYMA03G33700.11e-117(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-65indeterminate(ID)-domain 2